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flowBin

This is the development version of flowBin; for the stable release version, see flowBin.

Combining multitube flow cytometry data by binning


Bioconductor version: Development (3.19)

Software to combine flow cytometry data that has been multiplexed into multiple tubes with common markers between them, by establishing common bins across tubes in terms of the common markers, then determining expression within each tube for each bin in terms of the tube-specific markers.

Author: Kieran O'Neill

Maintainer: Kieran O'Neill <koneill at bccrc.ca>

Citation (from within R, enter citation("flowBin")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("flowBin")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowBin")
flowBin PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellBasedAssays, FlowCytometry, ImmunoOncology, Software
Version 1.39.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License Artistic-2.0
Depends methods, flowCore, flowFP, R (>= 2.10)
Imports class, limma, snow, BiocGenerics
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowBin_1.39.0.tar.gz
Windows Binary flowBin_1.39.0.zip
macOS Binary (x86_64) flowBin_1.39.0.tgz
macOS Binary (arm64) flowBin_1.39.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowBin
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowBin
Bioc Package Browser https://code.bioconductor.org/browse/flowBin/
Package Short Url https://bioconductor.org/packages/flowBin/
Package Downloads Report Download Stats