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flowCHIC

This is the development version of flowCHIC; for the stable release version, see flowCHIC.

Analyze flow cytometric data using histogram information


Bioconductor version: Development (3.19)

A package to analyze flow cytometric data of complex microbial communities based on histogram images

Author: Joachim Schumann <joachim.schumann at ufz.de>, Christin Koch <christin.koch at ufz.de>, Ingo Fetzer <info.fetzer at stockholmresilience.su.se>, Susann Müller <susann.mueller at ufz.de>

Maintainer: Author: Joachim Schumann <joachim.schumann at ufz.de>

Citation (from within R, enter citation("flowCHIC")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("flowCHIC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowCHIC")
Analyze flow cytometric data using histogram information PDF R Script
Reference Manual PDF

Details

biocViews CellBasedAssays, Clustering, FlowCytometry, ImmunoOncology, Software, Visualization
Version 1.37.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL-2
Depends R (>= 3.1.0)
Imports methods, flowCore, EBImage, vegan, hexbin, ggplot2, grid
System Requirements
URL http://www.ufz.de/index.php?en=16773
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowCHIC_1.37.0.tar.gz
Windows Binary flowCHIC_1.37.0.zip (64-bit only)
macOS Binary (x86_64) flowCHIC_1.37.0.tgz
macOS Binary (arm64) flowCHIC_1.37.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowCHIC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowCHIC
Bioc Package Browser https://code.bioconductor.org/browse/flowCHIC/
Package Short Url https://bioconductor.org/packages/flowCHIC/
Package Downloads Report Download Stats