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This is the development version of flowCHIC; for the stable release version, see flowCHIC.

Analyze flow cytometric data using histogram information

Bioconductor version: Development (3.19)

A package to analyze flow cytometric data of complex microbial communities based on histogram images

Author: Joachim Schumann <joachim.schumann at ufz.de>, Christin Koch <christin.koch at ufz.de>, Ingo Fetzer <info.fetzer at stockholmresilience.su.se>, Susann Müller <susann.mueller at ufz.de>

Maintainer: Author: Joachim Schumann <joachim.schumann at ufz.de>

Citation (from within R, enter citation("flowCHIC")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Analyze flow cytometric data using histogram information PDF R Script
Reference Manual PDF


biocViews CellBasedAssays, Clustering, FlowCytometry, ImmunoOncology, Software, Visualization
Version 1.37.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL-2
Depends R (>= 3.1.0)
Imports methods, flowCore, EBImage, vegan, hexbin, ggplot2, grid
System Requirements
URL http://www.ufz.de/index.php?en=16773
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Follow Installation instructions to use this package in your R session.

Source Package flowCHIC_1.37.0.tar.gz
Windows Binary flowCHIC_1.37.0.zip (64-bit only)
macOS Binary (x86_64) flowCHIC_1.37.0.tgz
macOS Binary (arm64) flowCHIC_1.37.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowCHIC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowCHIC
Bioc Package Browser https://code.bioconductor.org/browse/flowCHIC/
Package Short Url https://bioconductor.org/packages/flowCHIC/
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