DOI: 10.18129/B9.bioc.flowDensity    

This is the development version of flowDensity; for the stable release version, see flowDensity.

Sequential Flow Cytometry Data Gating

Bioconductor version: Development (3.9)

This package provides tools for automated sequential gating analogous to the manual gating strategy based on the density of the data.

Author: Mehrnoush Malek,M. Jafar Taghiyar

Maintainer: Mehrnoush Malek <mmalekes at bccrc.ca>

Citation (from within R, enter citation("flowDensity")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("flowDensity", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script Automated alternative to the current manual gating practice
PDF R Script Automated alternative to the current manual gating practice
PDF   Reference Manual
Text   NEWS


biocViews Bioinformatics, Cancer, CellBiology, Clustering, DensityGating, FlowCytData, FlowCytometry, ImmunoOncology, Software, StemCells
Version 1.17.2
In Bioconductor since BioC 3.0 (R-3.1) (4.5 years)
License Artistic-2.0
Imports flowCore, graphics, car, sp, rgeos, gplots, RFOC, flowWorkspace(>= 3.20.5), methods, stats, grDevices
SystemRequirements GEOS (>= 3.2.0);for building from source: GEOS from http://trac.osgeo.org/geos/; GEOS OSX frameworks built by William Kyngesburye at http://www.kyngchaos.com/ may be used for source installs on OSX.
Depends On Me
Imports Me ddPCRclust
Suggests Me
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package flowDensity_1.17.2.tar.gz
Windows Binary flowDensity_1.17.2.zip
Mac OS X 10.11 (El Capitan) flowDensity_1.17.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowDensity
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowDensity
Package Short Url http://bioconductor.org/packages/flowDensity/
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