geNetClassifier
This is the development version of geNetClassifier; for the stable release version, see geNetClassifier.
All Bioconductor versions of geNetClassifier
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12
Classify diseases and build associated gene networks using gene expression profiles
Bioconductor version: 3.24 · Package version: 1.53.0
Comprehensive package to automatically train and validate a multi-class SVM classifier based on gene expression data. Provides transparent selection of gene markers, their coexpression networks, and an interface to query the classifier.
Author: Sara Aibar, Celia Fontanillo and Javier De Las Rivas. Bioinformatics and Functional Genomics Group. Cancer Research Center (CiC-IBMCC, CSIC/USAL). Salamanca. Spain.
Maintainer: Sara Aibar <saibar at usal.es>
Citation
From within R, enter citation("geNetClassifier"):
Sara Aibar, Celia Fontanillo and Javier De Las Rivas. Bioinformatics and Functional Genomics Group. Cancer Research Center. Salamanca. Spain. geNetClassifier: Classify diseases and build associated gene networks using gene expression profiles. doi:10.18129/B9.bioc.geNetClassifier, R package version 1.53.0, https://bioconductor.org/packages/geNetClassifier.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("geNetClassifier")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.53.0 |
| License | GPL (>= 2) |
| URL | http://www.cicancer.org |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 2.12 (R-3.0) (13 years) |
| Downloads rank | 642 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Classification, DifferentialExpression, Microarray, Software |
| Package Short Url | https://bioconductor.org/packages/geNetClassifier/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("geNetClassifier")| geNetClassifier-vignette | R Script | |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | geNetClassifier_1.53.0.tar.gz |
| Windows binary (x86_64) | geNetClassifier_1.53.0.zip |
| macOS binary (arm64) | geNetClassifier_1.53.0.tgz |
| macOS binary (x86_64) | geNetClassifier_1.53.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/geNetClassifier |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/geNetClassifier |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 2.10.1), Biobase (>= 2.5.5), EBarrays, minet, methods
Imports: e1071, graphics, grDevices
Suggests: leukemiasEset, RUnit, BiocGenerics
Enhances: RColorBrewer, igraph, infotheo