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geneplotter

This is the development version of geneplotter; for the stable release version, see geneplotter.

Graphics related functions for Bioconductor


Bioconductor version: Development (3.19)

Functions for plotting genomic data

Author: Robert Gentleman [aut], Rohit Satyam [ctb] (Converted geneplotter vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("geneplotter")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("geneplotter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("geneplotter")
How to Assemble a chromLocation Object HTML R Script
Visualization of Microarray Data PDF R Script
Reference Manual PDF

Details

biocViews Software, Visualization
Version 1.81.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License Artistic-2.0
Depends R (>= 2.10), methods, Biobase, BiocGenerics, lattice, annotate
Imports AnnotationDbi, graphics, grDevices, grid, RColorBrewer, stats, utils
System Requirements
URL
See More
Suggests Rgraphviz, fibroEset, hgu95av2.db, hu6800.db, hgu133a.db, BiocStyle, knitr
Linking To
Enhances
Depends On Me HD2013SGI, Hiiragi2013, maEndToEnd
Imports Me biocGraph, DEXSeq, ENmix, MethylSeekR, RNAinteract
Suggests Me AgiMicroRna, biocGraph, Category, EnrichmentBrowser, GOstats, Single.mTEC.Transcriptomes
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package geneplotter_1.81.0.tar.gz
Windows Binary geneplotter_1.81.0.zip
macOS Binary (x86_64) geneplotter_1.81.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/geneplotter
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/geneplotter
Bioc Package Browser https://code.bioconductor.org/browse/geneplotter/
Package Short Url https://bioconductor.org/packages/geneplotter/
Package Downloads Report Download Stats