genomeIntervals
This is the development version of genomeIntervals; for the stable release version, see genomeIntervals.
All Bioconductor versions of genomeIntervals
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5
Operations on genomic intervals
Bioconductor version: 3.24 · Package version: 1.69.0
This package defines classes for representing genomic intervals and provides functions and methods for working with these. Note: The package provides the basic infrastructure for and is enhanced by the package 'girafe'.
Author: Julien Gagneur <gagneur at in.tum.de>, Joern Toedling, Richard Bourgon, Nicolas Delhomme
Maintainer: Julien Gagneur <gagneur at in.tum.de>
Citation
From within R, enter citation("genomeIntervals"):
Julien Gagneur, Joern Toedling, Richard Bourgon, Nicolas Delhomme. genomeIntervals: Operations on genomic intervals. doi:10.18129/B9.bioc.genomeIntervals, R package version 1.69.0, https://bioconductor.org/packages/genomeIntervals.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("genomeIntervals")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.69.0 |
| License | Artistic-2.0 |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 2.5 or earlier (R-2.10) (16 years) |
| Downloads rank | 616 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, Genetics, Infrastructure, Software |
| Package Short Url | https://bioconductor.org/packages/genomeIntervals/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("genomeIntervals")| Overview of the genomeIntervals package. | R Script | |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | genomeIntervals_1.69.0.tar.gz |
| Windows binary (x86_64) | genomeIntervals_1.69.0.zip |
| macOS binary (arm64) | genomeIntervals_1.69.0.tgz |
| macOS binary (x86_64) | genomeIntervals_1.69.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/genomeIntervals |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/genomeIntervals |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 2.15.0), methods, intervals (>= 0.14.0), BiocGenerics (>= 0.15.2)
Imports: Seqinfo, GenomicRanges (>= 1.21.16), IRanges (>= 2.3.14), S4Vectors (>= 0.7.10)
Reverse dependencies
Imports Me (1): easyRNASeq