globaltest
Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing
Bioconductor version: 3.24 · Package version: 5.67.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The global test tests groups of covariates (or features) for association with a response variable. This package implements the test with diagnostic plots and multiple testing utilities, along with several functions to facilitate the use of this test for gene set testing of GO and KEGG terms.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("globaltest")Details
| Maintainer | Jelle Goeman <j.j.goeman@lumc.nl> |
| Author | Jelle Goeman and Jan Oosting, with contributions by Livio Finos, Aldo Solari, Dominic Edelmann |
| License | GPL (>= 2) |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Bioinformatics, DifferentialExpression, GO, Microarray, OneChannel, Pathways, Software |
| Package Short Url | https://bioconductor.org/packages/globaltest/ |
Citation
From within R, enter citation("globaltest"):
Jelle Goeman and Jan Oosting, with contributions by Livio Finos, Aldo Solari, Dominic Edelmann. globaltest: Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing. doi:10.18129/B9.bioc.globaltest, R package version 5.67.0, https://bioconductor.org/packages/globaltest.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | globaltest_5.67.0.tar.gz |
| Windows binary (x86_64) | globaltest_5.67.0.zip |
| macOS binary (arm64) | globaltest_5.67.0.tgz |
| macOS binary (x86_64) | globaltest_5.67.0.tgz |
Dependencies
Depends: methods, survival
Imports: Biobase, AnnotationDbi, annotate, graphics
Suggests: vsn, golubEsets, KEGGREST, hu6800.db, Rgraphviz, GO.db, lungExpression, org.Hs.eg.db, GSEABase, penalized, gss, MASS, boot, rpart, mstate