DOI: 10.18129/B9.bioc.hmdbQuery    

This is the development version of hmdbQuery; for the stable release version, see hmdbQuery.

utilities for exploration of human metabolome database

Bioconductor version: Development (3.9)

Define utilities for exploration of human metabolome database, including functions to retrieve specific metabolite entries and data snapshots with pairwise associations (metabolite-gene,-protein,-disease).

Author: Vince Carey <stvjc at>

Maintainer: VJ Carey <stvjc at>

Citation (from within R, enter citation("hmdbQuery")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("hmdbQuery", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script hmdbQuery: working with Human Metabolome Database (
PDF   Reference Manual


biocViews Infrastructure, Metabolomics, Software
Version 1.3.0
In Bioconductor since BioC 3.7 (R-3.5) (1 year)
License Artistic-2.0
Depends R (>= 3.5), XML
Imports S4Vectors, methods, utils
Suggests knitr, annotate, gwascat, testthat
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package hmdbQuery_1.3.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) hmdbQuery_1.3.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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