iCOBRA
Comparison and Visualization of Ranking and Assignment Methods
Bioconductor version: 3.24 · Package version: 1.41.1
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package provides functions for calculation and visualization of performance metrics for evaluation of ranking and binary classification (assignment) methods. Various types of performance plots can be generated programmatically. The package also contains a shiny application for interactive exploration of results.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iCOBRA")Details
| Maintainer | Charlotte Soneson <charlottesoneson@gmail.com> |
| Author | Charlotte Soneson [aut, cre] (ORCID: <https://orcid.org/0000-0003-3833-2169>) |
| License | GPL (>=2) |
| URL | https://csoneson.github.io/iCOBRA/ |
| Bug Reports | https://github.com/csoneson/iCOBRA/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Classification, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/iCOBRA/ |
Citation
From within R, enter citation("iCOBRA"):
Charlotte Soneson. iCOBRA: Comparison and Visualization of Ranking and Assignment Methods. doi:10.18129/B9.bioc.iCOBRA, R package version 1.41.1, https://bioconductor.org/packages/iCOBRA.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | iCOBRA_1.41.1.tar.gz |
| Windows binary (x86_64) | iCOBRA_1.41.1.zip |
| macOS binary (arm64) | iCOBRA_1.41.1.tgz |
| macOS binary (x86_64) | iCOBRA_1.41.1.tgz |
Dependencies
Depends: R (>= 4.4.0)
Imports: shiny (>= 0.9.1.9008), shinydashboard, reshape2, ggplot2 (>= 3.4.0), scales, ROCR, dplyr, DT, limma, methods, utils, rlang, prompter, SimpleUpset, patchwork
Reverse dependencies
Suggests Me (1): muscat