iCOBRA

DOI: 10.18129/B9.bioc.iCOBRA    

This is the development version of iCOBRA; for the stable release version, see iCOBRA.

Comparison and Visualization of Ranking and Assignment Methods

Bioconductor version: Development (3.12)

This package provides functions for calculation and visualization of performance metrics for evaluation of ranking and binary classification (assignment) methods. It also contains a shiny application for interactive exploration of results.

Author: Charlotte Soneson [aut, cre]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("iCOBRA")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("iCOBRA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iCOBRA")

 

HTML R Script iCOBRA User Guide
PDF   Reference Manual
Text   NEWS

Details

biocViews Classification, Software
Version 1.17.2
In Bioconductor since BioC 3.3 (R-3.3) (4.5 years)
License GPL (>=2)
Depends R (>= 3.4)
Imports shiny (>= 0.9.1.9008), shinydashboard, shinyBS, reshape2, ggplot2 (>= 2.0.0), scales, ROCR, dplyr, DT, limma, methods, UpSetR
LinkingTo
Suggests knitr, testthat
SystemRequirements
Enhances
URL https://github.com/markrobinsonuzh/iCOBRA
BugReports https://github.com/markrobinsonuzh/iCOBRA/issues
Depends On Me
Imports Me
Suggests Me muscat, SummarizedBenchmark
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iCOBRA_1.17.2.tar.gz
Windows Binary iCOBRA_1.17.2.zip
macOS 10.13 (High Sierra) iCOBRA_1.17.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/iCOBRA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iCOBRA
Package Short Url https://bioconductor.org/packages/iCOBRA/
Package Downloads Report Download Stats

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