iModMix
This is the development version of iModMix; for the stable release version, see iModMix.
All Bioconductor versions of iModMix
3.24 (devel), 3.23 (release), 3.22
Integrative Modules for Multi-Omics Data
Bioconductor version: 3.24 · Package version: 1.3.1
The iModMix network-based method offers an integrated framework for analyzing multi-omics data, including metabolomics, proteomics, and transcriptomics data, enabling the exploration of intricate molecular associations within heterogeneous biological systems.
Author: Isis Narvaez-Bandera [aut, cre] 
Maintainer: Isis Narvaez-Bandera <isis.narvaez at upr.edu>
Citation
From within R, enter citation("iModMix"):
Isis Narvaez-Bandera. iModMix: Integrative Modules for Multi-Omics Data. doi:10.18129/B9.bioc.iModMix, R package version 1.3.1, https://bioconductor.org/packages/iModMix.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("iModMix")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.3.1 |
| License | GPL-3 |
| URL | https://github.com/biodatalab/iModMix |
| Bug Reports | https://github.com/biodatalab/iModMix/issues |
| Last updated | 2026-09-14 |
| In Bioconductor since | BioC 3.22 (R-4.5) (less than a year) |
| Status | Deprecated |
| Downloads rank | 2304 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Clustering, GeneExpression, Metabolomics, Network, PrincipalComponent, Proteomics, Software, Transcriptomics, Visualization |
| Package Short Url | https://bioconductor.org/packages/iModMix/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iModMix")| iModMix -integrative Modules for Multi-omics data | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | iModMix_1.3.1.tar.gz |
| Windows binary (x86_64) | iModMix_1.3.1.zip |
| macOS binary (arm64) | iModMix_1.3.1.tgz |
| macOS binary (x86_64) | iModMix_1.3.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/iModMix |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iModMix |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.5.0)
Imports: config (>= 0.3.2), golem (>= 0.4.1), shiny (>= 1.7.5), ComplexHeatmap, DT, RColorBrewer, WGCNA, corrplot, cowplot, dynamicTreeCut, ggplot2, glassoFast, impute, purrr, stringr, tidyr, visNetwork, shinyBS, httr, dplyr, stats, iModMixData, SummarizedExperiment, ExperimentHub (>= 2.99.0)
Suggests: testthat (>= 3.0.0), ggfortify, shinyWidgets, pROC, tuneR, knitr, curl, readxl, reshape2, vroom, here, enrichR, rmarkdown