iSeq
This is the development version of iSeq; for the stable release version, see iSeq.
All Bioconductor versions of iSeq
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7
Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models
Bioconductor version: 3.24 · Package version: 1.65.0
Bayesian hidden Ising models are implemented to identify IP-enriched genomic regions from ChIP-seq data. They can be used to analyze ChIP-seq data with and without controls and replicates.
Author: Qianxing Mo
Maintainer: Qianxing Mo <qianxing.mo at moffitt.org>
Citation
From within R, enter citation("iSeq"):
Qianxing Mo. iSeq: Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models. doi:10.18129/B9.bioc.iSeq, R package version 1.65.0, https://bioconductor.org/packages/iSeq.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("iSeq")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.65.0 |
| License | GPL (>= 2) |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 2.7 (R-2.12) (15 years) |
| Downloads rank | 1644 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | ChIPSeq, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/iSeq/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iSeq")| iSeq | R Script | |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | iSeq_1.65.0.tar.gz |
| Windows binary (x86_64) | iSeq_1.65.0.zip |
| macOS binary (arm64) | iSeq_1.65.0.tgz |
| macOS binary (x86_64) | iSeq_1.65.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/iSeq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iSeq |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 2.10.0)