ivygapSE
This is the development version of ivygapSE; for the stable release version, see ivygapSE.
A SummarizedExperiment for Ivy-GAP data
Bioconductor version: Development (3.20)
Define a SummarizedExperiment and exploratory app for Ivy-GAP glioblastoma image, expression, and clinical data.
Author: Vince Carey
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("ivygapSE")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ivygapSE")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ivygapSE")
ivygapSE -- SummarizedExperiment for Ivy-GAP | HTML | R Script |
Reference Manual |
Details
biocViews | GeneExpression, Sequencing, Software, Survival, Transcription, Visualization |
Version | 1.27.0 |
In Bioconductor since | BioC 3.6 (R-3.4) (7 years) |
License | Artistic-2.0 |
Depends | R (>= 3.5.0), SummarizedExperiment |
Imports | shiny, survival, survminer, hwriter, plotly, ggplot2, S4Vectors, graphics, stats, utils, UpSetR |
System Requirements | |
URL |
See More
Suggests | knitr, png, limma, grid, DT, randomForest, digest, testthat, rmarkdown, BiocStyle, magick, statmod, codetools |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | ivygapSE_1.27.0.tar.gz |
Windows Binary | ivygapSE_1.27.0.zip |
macOS Binary (x86_64) | ivygapSE_1.27.0.tgz |
macOS Binary (arm64) | ivygapSE_1.27.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ivygapSE |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ivygapSE |
Bioc Package Browser | https://code.bioconductor.org/browse/ivygapSE/ |
Package Short Url | https://bioconductor.org/packages/ivygapSE/ |
Package Downloads Report | Download Stats |