metaMS

DOI: 10.18129/B9.bioc.metaMS    

This is the development version of metaMS; to use it, please install the devel version of Bioconductor.

MS-based metabolomics annotation pipeline

Bioconductor version: Development (3.10)

MS-based metabolomics data processing and compound annotation pipeline.

Author: Ron Wehrens [aut, cre] (author of GC-MS part), Pietro Franceschi [aut] (author of LC-MS part), Nir Shahaf [ctb], Matthias Scholz [ctb], Georg Weingart [ctb] (development of GC-MS approach), Elisabete Carvalho [ctb] (testing and feedback of GC-MS pipeline)

Maintainer: Yann Guitton <yann.guitton at gmail.com>

Citation (from within R, enter citation("metaMS")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("metaMS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("metaMS")

 

PDF R Script runGC
PDF R Script runLC
PDF   Reference Manual
Text   NEWS

Details

biocViews ImmunoOncology, MassSpectrometry, Metabolomics, Software
Version 1.21.2
In Bioconductor since BioC 2.14 (R-3.1) (5.5 years)
License GPL (>= 2)
Depends R (>= 2.10), methods, CAMERA, xcms(>= 1.35)
Imports Matrix, tools, robustbase, BiocGenerics
LinkingTo
Suggests metaMSdata, RUnit
SystemRequirements
Enhances
URL https://github.com/yguitton/metaMS
Depends On Me
Imports Me
Suggests Me CluMSID
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package metaMS_1.21.2.tar.gz
Windows Binary metaMS_1.21.2.zip
Mac OS X 10.11 (El Capitan) metaMS_1.21.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/metaMS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/metaMS
Package Short Url http://bioconductor.org/packages/metaMS/
Package Downloads Report Download Stats

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