metabolomicsWorkbenchR
This is the development version of metabolomicsWorkbenchR; for the stable release version, see metabolomicsWorkbenchR.
All Bioconductor versions of metabolomicsWorkbenchR
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12
Metabolomics Workbench in R
Bioconductor version: 3.24 · Package version: 1.23.0
This package provides functions for interfacing with the Metabolomics Workbench RESTful API. Study, compound, protein and gene information can be searched for using the API. Methods to obtain study data in common Bioconductor formats such as SummarizedExperiment and MultiAssayExperiment are also included.
Author: Gavin Rhys Lloyd [aut, cre], Ralf Johannes Maria Weber [aut]
Maintainer: Gavin Rhys Lloyd <g.r.lloyd at bham.ac.uk>
Citation
From within R, enter citation("metabolomicsWorkbenchR"):
Gavin Rhys Lloyd, Ralf Johannes Maria Weber. metabolomicsWorkbenchR: Metabolomics Workbench in R. doi:10.18129/B9.bioc.metabolomicsWorkbenchR, R package version 1.23.0, https://bioconductor.org/packages/metabolomicsWorkbenchR.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("metabolomicsWorkbenchR")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.23.0 |
| License | GPL-3 |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.12 (R-4.0) (5 years) |
| Downloads rank | 1248 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Metabolomics, Software |
| Package Short Url | https://bioconductor.org/packages/metabolomicsWorkbenchR/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("metabolomicsWorkbenchR")| Example using structToolbox | HTML | R Script |
| Introduction to metabolomicsWorkbenchR | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | metabolomicsWorkbenchR_1.23.0.tar.gz |
| Windows binary (x86_64) | metabolomicsWorkbenchR_1.23.0.zip |
| macOS binary (arm64) | metabolomicsWorkbenchR_1.23.0.tgz |
| macOS binary (x86_64) | metabolomicsWorkbenchR_1.23.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/metabolomicsWorkbenchR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/metabolomicsWorkbenchR |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.0)
Imports: data.table, httr, jsonlite, methods, MultiAssayExperiment, struct, SummarizedExperiment, utils
Suggests: BiocStyle, covr, knitr, HDF5Array, httptest, rmarkdown, structToolbox, testthat, pmp, grid, png