methInheritSim

DOI: 10.18129/B9.bioc.methInheritSim    

This is the development version of methInheritSim; for the stable release version, see methInheritSim.

Simulating Whole-Genome Inherited Bisulphite Sequencing Data

Bioconductor version: Development (3.11)

Simulate a multigeneration methylation case versus control experiment with inheritance relation using a real control dataset.

Author: Pascal Belleau, Astrid DeschĂȘnes and Arnaud Droit

Maintainer: Pascal Belleau <pascal_belleau at hotmail.com>

Citation (from within R, enter citation("methInheritSim")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("methInheritSim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methInheritSim")

 

HTML R Script Simulating Whole-Genome Inherited Bisulphite Sequencing Data
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews BiologicalQuestion, DNAMethylation, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylSeq, Sequencing, Software, StatisticalMethod, WholeGenome
Version 1.9.0
In Bioconductor since BioC 3.6 (R-3.4) (2 years)
License Artistic-2.0
Depends R (>= 3.4)
Imports methylKit, GenomicRanges, GenomeInfoDb, parallel, BiocGenerics, S4Vectors, methods, stats, IRanges, msm
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, RUnit, methylInheritance
SystemRequirements
Enhances
URL https://github.com/belleau/methInheritSim
BugReports https://github.com/belleau/methInheritSim/issues
Depends On Me
Imports Me
Suggests Me methylInheritance
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package methInheritSim_1.9.0.tar.gz
Windows Binary methInheritSim_1.9.0.zip
Mac OS X 10.11 (El Capitan) methInheritSim_1.9.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/methInheritSim
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/methInheritSim
Package Short Url https://bioconductor.org/packages/methInheritSim/
Package Downloads Report Download Stats

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