methimpute

DOI: 10.18129/B9.bioc.methimpute    

This is the development version of methimpute; for the stable release version, see methimpute.

Imputation-guided re-construction of complete methylomes from WGBS data

Bioconductor version: Development (3.8)

This package implements functions for calling methylation for all cytosines in the genome.

Author: Aaron Taudt

Maintainer: Aaron Taudt <aaron.taudt at gmail.com>

Citation (from within R, enter citation("methimpute")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("methimpute", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methimpute")

 

PDF R Script Methylation status calling with METHimpute
PDF   Reference Manual
Text   NEWS

Details

biocViews Coverage, DNAMethylation, Epigenetics, HiddenMarkovModel, Sequencing, Software
Version 1.3.1
License Artistic-2.0
Depends R (>= 3.4.0), GenomicRanges, ggplot2
Imports Rcpp (>= 0.12.4.5), methods, utils, grDevices, stats, GenomeInfoDb, IRanges, Biostrings, reshape2, minpack.lm, data.table
LinkingTo Rcpp
Suggests knitr, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package methimpute_1.3.1.tar.gz
Windows Binary methimpute_1.3.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) methimpute_1.3.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/methimpute
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/methimpute
Package Short Url http://bioconductor.org/packages/methimpute/
Package Downloads Report Download Stats

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