methylMnM

DOI: 10.18129/B9.bioc.methylMnM    

This is the development version of methylMnM; for the stable release version, see methylMnM.

detect different methylation level (DMR)

Bioconductor version: Development (3.9)

To give the exactly p-value and q-value of MeDIP-seq and MRE-seq data for different samples comparation.

Author: Yan Zhou, Bo Zhang, Nan Lin, BaoXue Zhang and Ting Wang

Maintainer: Yan Zhou<zhouy1016 at 163.com>

Citation (from within R, enter citation("methylMnM")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("methylMnM", version = "3.9")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methylMnM")

 

PDF R Script methylMnM
PDF   Reference Manual

Details

biocViews DNAMethylation, Sequencing, Software
Version 1.21.0
In Bioconductor since BioC 2.13 (R-3.0) (5 years)
License GPL-3
Depends R (>= 2.12.1), edgeR, statmod
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me SIMD
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package methylMnM_1.21.0.tar.gz
Windows Binary methylMnM_1.21.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) methylMnM_1.21.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/methylMnM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/methylMnM
Package Short Url http://bioconductor.org/packages/methylMnM/
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