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pandaR

This is the development version of pandaR; for the stable release version, see pandaR.

PANDA Algorithm


Bioconductor version: Development (3.19)

Runs PANDA, an algorithm for discovering novel network structure by combining information from multiple complementary data sources.

Author: Dan Schlauch, Joseph N. Paulson, Albert Young, John Quackenbush, Kimberly Glass

Maintainer: Joseph N. Paulson <paulson.joseph at gene.com>, Dan Schlauch <dschlauch at genospace.com>

Citation (from within R, enter citation("pandaR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("pandaR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pandaR")
pandaR Package HTML R Script
Reference Manual PDF

Details

biocViews GeneExpression, GeneRegulation, GraphAndNetwork, Microarray, Network, NetworkInference, Software, StatisticalMethod, Transcription
Version 1.35.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL-2
Depends R (>= 3.0.0), methods, Biobase, BiocGenerics
Imports matrixStats, igraph, ggplot2, grid, reshape, plyr, RUnit, hexbin
System Requirements
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Suggests knitr, rmarkdown
Linking To
Enhances
Depends On Me netZooR
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pandaR_1.35.0.tar.gz
Windows Binary pandaR_1.35.0.zip
macOS Binary (x86_64) pandaR_1.35.0.tgz
macOS Binary (arm64) pandaR_1.35.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/pandaR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pandaR
Bioc Package Browser https://code.bioconductor.org/browse/pandaR/
Package Short Url https://bioconductor.org/packages/pandaR/
Package Downloads Report Download Stats