pepXMLTab
Parsing pepXML files and filter based on peptide FDR.
Bioconductor version: 3.24 · Package version: 1.47.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Parsing pepXML files based one XML package. The package tries to handle pepXML files generated from different softwares. The output will be a peptide-spectrum-matching tabular file. The package also provide function to filter the PSMs based on FDR.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pepXMLTab")Details
| Maintainer | Xiaojing Wang <xiaojing.wang@vanderbilt.edu> |
| Author | Xiaojing Wang |
| License | Artistic-2.0 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | ImmunoOncology, MassSpectrometry, Proteomics, Software |
| Package Short Url | https://bioconductor.org/packages/pepXMLTab/ |
Citation
From within R, enter citation("pepXMLTab"):
Xiaojing Wang. pepXMLTab: Parsing pepXML files and filter based on peptide FDR. doi:10.18129/B9.bioc.pepXMLTab, R package version 1.47.0, https://bioconductor.org/packages/pepXMLTab.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | pepXMLTab_1.47.0.tar.gz |
| Windows binary (x86_64) | pepXMLTab_1.47.0.zip |
| macOS binary (arm64) | pepXMLTab_1.47.0.tgz |
| macOS binary (x86_64) | pepXMLTab_1.47.0.tgz |