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pogos

This is the development version of pogos; for the stable release version, see pogos.

PharmacOGenomics Ontology Support


Bioconductor version: Development (3.20)

Provide simple utilities for querying bhklab PharmacoDB, modeling API outputs, and integrating to cell and compound ontologies.

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("pogos")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("pogos")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews ImmunoOncology, Pharmacogenomics, PooledScreens, Software
Version 1.25.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License Artistic-2.0
Depends R (>= 3.5.0), rjson (>= 0.2.15), httr (>= 1.3.1)
Imports methods, S4Vectors, utils, shiny, ontoProc, ggplot2, graphics
System Requirements
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Suggests knitr, DT, ontologyPlot, testthat, rmarkdown, BiocStyle
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64) pogos_1.25.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/pogos
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pogos
Bioc Package Browser https://code.bioconductor.org/browse/pogos/
Package Short Url https://bioconductor.org/packages/pogos/
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