proBAMr
This is the development version of proBAMr; for the stable release version, see proBAMr.
Generating SAM file for PSMs in shotgun proteomics data
Bioconductor version: Development (3.20)
Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.
Author: Xiaojing Wang
Maintainer: Xiaojing Wang <xiaojing.wang at vanderbilt.edu>
Citation (from within R, enter
citation("proBAMr")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("proBAMr")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("proBAMr")
Introduction to proBAMr | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ImmunoOncology, MassSpectrometry, Proteomics, Software, Visualization |
Version | 1.39.0 |
In Bioconductor since | BioC 3.0 (R-3.1) (10 years) |
License | Artistic-2.0 |
Depends | R (>= 3.0.1), IRanges, AnnotationDbi |
Imports | GenomicRanges, Biostrings, GenomicFeatures, txdbmaker, rtracklayer |
System Requirements | |
URL |
See More
Suggests | RUnit, BiocGenerics |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | proBAMr_1.39.0.tar.gz |
Windows Binary | proBAMr_1.39.0.zip |
macOS Binary (x86_64) | proBAMr_1.39.0.tgz |
macOS Binary (arm64) | proBAMr_1.39.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/proBAMr |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/proBAMr |
Bioc Package Browser | https://code.bioconductor.org/browse/proBAMr/ |
Package Short Url | https://bioconductor.org/packages/proBAMr/ |
Package Downloads Report | Download Stats |