psygenet2r
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This is the development version of psygenet2r; for the stable release version, see psygenet2r.
psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
Bioconductor version: Development (3.20)
Package to retrieve data from PsyGeNET database (www.psygenet.org) and to perform comorbidity studies with PsyGeNET's and user's data.
Author: Alba Gutierrez-Sacristan [aut, cre], Carles Hernandez-Ferrer [aut], Jaun R. Gonzalez [aut], Laura I. Furlong [aut]
Maintainer: Alba Gutierrez-Sacristan <a.gutierrez.sacristan at gmail.com>
citation("psygenet2r")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("psygenet2r")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("psygenet2r")
psygenet2r: An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders | HTML | R Script |
psygenet2r: Case study on GWAS on bipolar disorder | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | BiomedicalInformatics, DataImport, DataRepresentation, Genetics, Infrastructure, Software |
Version | 1.37.1 |
In Bioconductor since | BioC 3.3 (R-3.3) (8.5 years) |
License | MIT + file LICENSE |
Depends | R (>= 3.4) |
Imports | stringr, RCurl, igraph, ggplot2, reshape2, grid, parallel, biomaRt, BgeeDB, topGO, Biobase, labeling, GO.db |
System Requirements | |
URL |
See More
Suggests | testthat, knitr, rmarkdown, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | psygenet2r_1.37.1.tar.gz |
Windows Binary | psygenet2r_1.37.1.zip (64-bit only) |
macOS Binary (x86_64) | psygenet2r_1.37.1.tgz |
macOS Binary (arm64) | psygenet2r_1.37.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/psygenet2r |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/psygenet2r |
Package Short Url | https://bioconductor.org/packages/psygenet2r/ |
Package Downloads Report | Download Stats |