qcmetrics
This is the development version of qcmetrics; for the stable release version, see qcmetrics.
A Framework for Quality Control
Bioconductor version: Development (3.20)
The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.
Author: Laurent Gatto [aut, cre]
Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>
citation("qcmetrics")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("qcmetrics")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("qcmetrics")
Index file for the qcmetrics package vignette | HTML | R Script |
Reference Manual |
Details
biocViews | ImmunoOncology, MassSpectrometry, Microarray, Proteomics, QualityControl, ReportWriting, Software, Visualization |
Version | 1.43.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (11 years) |
License | GPL-2 |
Depends | R (>= 3.3) |
Imports | Biobase, methods, knitr, tools, xtable, pander, S4Vectors |
System Requirements | |
URL | http://lgatto.github.io/qcmetrics/articles/qcmetrics.html |
Bug Reports | https://github.com/lgatto/qcmetrics/issues |
See More
Suggests | affy, MSnbase, ggplot2, lattice, mzR, BiocStyle, rmarkdown, markdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | MSstatsQC |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | qcmetrics_1.43.0.tar.gz |
Windows Binary | qcmetrics_1.43.0.zip (64-bit only) |
macOS Binary (x86_64) | qcmetrics_1.43.0.tgz |
macOS Binary (arm64) | qcmetrics_1.43.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/qcmetrics |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/qcmetrics |
Bioc Package Browser | https://code.bioconductor.org/browse/qcmetrics/ |
Package Short Url | https://bioconductor.org/packages/qcmetrics/ |
Package Downloads Report | Download Stats |