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This is the development version of rGADEM; for the stable release version, see rGADEM.

de novo motif discovery

Bioconductor version: Development (3.20)

rGADEM is an efficient de novo motif discovery tool for large-scale genomic sequence data. It is an open-source R package, which is based on the GADEM software.

Author: Arnaud Droit, Raphael Gottardo, Gordon Robertson and Leiping Li

Maintainer: Arnaud Droit <arnaud.droit at>

Citation (from within R, enter citation("rGADEM")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

The rGADEM users guide PDF R Script
Reference Manual PDF


biocViews ChIPSeq, ChIPchip, Microarray, MotifDiscovery, Sequencing, Software
Version 2.53.0
In Bioconductor since BioC 2.6 (R-2.11) (14 years)
License Artistic-2.0
Depends R (>= 2.11.0), Biostrings, IRanges, BSgenome, methods, seqLogo
Imports Biostrings, GenomicRanges, methods, graphics, seqLogo
System Requirements
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Suggests BSgenome.Hsapiens.UCSC.hg19, rtracklayer
Linking To
Depends On Me
Imports Me TCGAWorkflow
Suggests Me
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Follow Installation instructions to use this package in your R session.

Source Package rGADEM_2.53.0.tar.gz
Windows Binary (64-bit only)
macOS Binary (x86_64) rGADEM_2.53.0.tgz
macOS Binary (arm64) rGADEM_2.53.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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