rTRMui
This is the development version of rTRMui; for the stable release version, see rTRMui.
All Bioconductor versions of rTRMui
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13
A shiny user interface for rTRM
Bioconductor version: 3.24 · Package version: 1.51.0
This package provides a web interface to compute transcriptional regulatory modules with rTRM.
Author: Diego Diez
Maintainer: Diego Diez <diego10ruiz at gmail.com>
Citation
From within R, enter citation("rTRMui"):
Diego Diez. rTRMui: A shiny user interface for rTRM. doi:10.18129/B9.bioc.rTRMui, R package version 1.51.0, https://bioconductor.org/packages/rTRMui.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("rTRMui")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.51.0 |
| License | GPL-3 |
| URL | https://github.com/ddiez/rTRMui |
| Bug Reports | https://github.com/ddiez/rTRMui/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 2.13 (R-3.0) (12 years) |
| Downloads rank | 1179 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | GUI, GeneRegulation, GraphAndNetwork, Network, Software, Transcription |
| Package Short Url | https://bioconductor.org/packages/rTRMui/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rTRMui")| Introduction to rTRMui | R Script | |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | rTRMui_1.51.0.tar.gz |
| Windows binary (x86_64) | rTRMui_1.51.0.zip |
| macOS binary (arm64) | rTRMui_1.51.0.tgz |
| macOS binary (x86_64) | rTRMui_1.51.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rTRMui |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rTRMui |
| Package Downloads Report | Download Stats |
Dependencies
Imports: shiny (>= 0.9), rTRM, MotifDb, org.Hs.eg.db, org.Mm.eg.db