rgoslin
Lipid Shorthand Name Parsing and Normalization
Bioconductor version: 3.24 · Package version: 1.17.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The R implementation for the Grammar of Succint Lipid Nomenclature parses different short hand notation dialects for lipid names. It normalizes them to a standard name. It further provides calculated monoisotopic masses and sum formulas for each successfully parsed lipid name and supplements it with LIPID MAPS Category and Class information. Also, the structural level and further structural details about the head group, fatty acyls and functional groups are returned, where applicable.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rgoslin")Details
| Maintainer | Nils Hoffmann <nils.hoffmann@cebitec.uni-bielefeld.de> |
| Author | Nils Hoffmann [aut, cre] (ORCID: <https://orcid.org/0000-0002-6540-6875>), Dominik Kopczynski [aut] (ORCID: <https://orcid.org/0000-0001-5885-4568>) |
| License | MIT + file LICENSE |
| URL | https://github.com/lifs-tools/rgoslin |
| Bug Reports | https://github.com/lifs-tools/rgoslin/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Lipidomics, MassSpectrometry, Metabolomics, Normalization, Preprocessing, Software |
| Package Short Url | https://bioconductor.org/packages/rgoslin/ |
Citation
From within R, enter citation("rgoslin"):
Nils Hoffmann, Dominik Kopczynski. rgoslin: Lipid Shorthand Name Parsing and Normalization. doi:10.18129/B9.bioc.rgoslin, R package version 1.17.0, https://bioconductor.org/packages/rgoslin.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | rgoslin_1.17.0.tar.gz |
| Windows binary (x86_64) | rgoslin_1.17.0.zip |
| macOS binary (arm64) | rgoslin_1.17.0.tgz |
| macOS binary (x86_64) | rgoslin_1.17.0.tgz |
Dependencies
Imports: Rcpp (>= 1.0.3), dplyr
LinkingTo: Rcpp
Suggests: testthat (>= 2.1.0), BiocStyle, knitr, rmarkdown, kableExtra, BiocManager, stringr, stringi, ggplot2, tibble, lipidr
Reverse dependencies
Suggests Me (1): MetMashR