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rhdf5client

This is the development version of rhdf5client; for the stable release version, see rhdf5client.

Access HDF5 content from HDF Scalable Data Service


Bioconductor version: Development (3.19)

This package provides functionality for reading data from HDF Scalable Data Service from within R. The HSDSArray function bridges from HSDS to the user via the DelayedArray interface. Bioconductor manages an open HSDS instance graciously provided by John Readey of the HDF Group.

Author: Samuela Pollack [aut], Shweta Gopaulakrishnan [aut], BJ Stubbs [aut], Alexey Sergushichev [aut], Vincent Carey [cre, aut]

Maintainer: Vincent Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("rhdf5client")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rhdf5client")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rhdf5client")
HSDSArray DelayedArray backend HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Infrastructure, Software
Version 1.25.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License Artistic-2.0
Depends R (>= 3.6), methods, DelayedArray
Imports httr, rjson, utils, data.table
System Requirements
URL
See More
Suggests knitr, testthat, BiocStyle, DT, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me phantasusLite, restfulSE
Suggests Me BiocOncoTK, HumanTranscriptomeCompendium, restfulSEData
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rhdf5client_1.25.0.tar.gz
Windows Binary rhdf5client_1.25.0.zip
macOS Binary (x86_64) rhdf5client_1.25.0.tgz
macOS Binary (arm64) rhdf5client_1.25.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rhdf5client
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rhdf5client
Bioc Package Browser https://code.bioconductor.org/browse/rhdf5client/
Package Short Url https://bioconductor.org/packages/rhdf5client/
Package Downloads Report Download Stats