riboSeqR

DOI: 10.18129/B9.bioc.riboSeqR    

This is the development version of riboSeqR; for the stable release version, see riboSeqR.

Analysis of sequencing data from ribosome profiling experiments

Bioconductor version: Development (3.9)

Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.

Author: Thomas J. Hardcastle

Maintainer: Thomas J. Hardcastle <tjh48 at cam.ac.uk>

Citation (from within R, enter citation("riboSeqR")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("riboSeqR", version = "3.9")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("riboSeqR")

 

PDF R Script riboSeqR
PDF   Reference Manual
Text   NEWS

Details

biocViews Genetics, RiboSeq, Sequencing, Software, Visualization
Version 1.17.0
In Bioconductor since BioC 3.0 (R-3.1) (4 years)
License GPL-3
Depends R (>= 3.0.2), methods, GenomicRanges, abind
Imports Rsamtools, IRanges, baySeq, GenomeInfoDb, seqLogo
LinkingTo
Suggests BiocStyle, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package riboSeqR_1.17.0.tar.gz
Windows Binary riboSeqR_1.17.0.zip
Mac OS X 10.11 (El Capitan) riboSeqR_1.17.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/riboSeqR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/riboSeqR
Package Short Url http://bioconductor.org/packages/riboSeqR/
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