roar
Identify differential APA usage from RNA-seq alignments
Bioconductor version: 3.24 · Package version: 1.49.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Identify preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("roar")Details
| Maintainer | Elena Grassi <grassi.e@gmail.com> |
| Author | Elena Grassi |
| License | GPL-3 |
| URL | https://github.com/vodkatad/roar/ |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | HighThroughputSequencing, RNAseq, Sequencing, Software, Transcription |
| Package Short Url | https://bioconductor.org/packages/roar/ |
Citation
From within R, enter citation("roar"):
Elena Grassi. roar: Identify differential APA usage from RNA-seq alignments. doi:10.18129/B9.bioc.roar, R package version 1.49.0, https://bioconductor.org/packages/roar.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | roar_1.49.0.tar.gz |
| Windows binary (x86_64) | roar_1.49.0.zip |
| macOS binary (arm64) | roar_1.49.0.tgz |
| macOS binary (x86_64) | roar_1.49.0.tgz |
Dependencies
Depends: R (>= 3.0.1)
Imports: methods, BiocGenerics, S4Vectors, IRanges, GenomicRanges, SummarizedExperiment, GenomicAlignments (>= 0.99.4), rtracklayer, GenomeInfoDb
Suggests: RNAseqData.HNRNPC.bam.chr14, testthat