rrvgo
Reduce + Visualize GO
Bioconductor version: 3.24 · Package version: 1.25.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Reduce and visualize lists of Gene Ontology terms by identifying redudance based on semantic similarity.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rrvgo")Details
| Maintainer | Sergi Sayols <sergisayolspuig@gmail.com> |
| Author | Sergi Sayols [aut, cre], Sara Elmeligy [ctb] |
| License | GPL-3 |
| URL | https://www.bioconductor.org/packages/rrvgo, https://ssayols.github.io/rrvgo/index.html |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Annotation, Clustering, GO, Network, Pathways, Software |
| Package Short Url | https://bioconductor.org/packages/rrvgo/ |
Citation
From within R, enter citation("rrvgo"):
Sergi Sayols. rrvgo: Reduce + Visualize GO. doi:10.18129/B9.bioc.rrvgo, R package version 1.25.0, https://bioconductor.org/packages/rrvgo.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | rrvgo_1.25.0.tar.gz |
| Windows binary (x86_64) | rrvgo_1.25.0.zip |
| macOS binary (arm64) | rrvgo_1.25.0.tgz |
| macOS binary (x86_64) | rrvgo_1.25.0.tgz |
Dependencies
Imports: GOSemSim, AnnotationDbi, GO.db, pheatmap, ggplot2, ggrepel, treemap, tm, wordcloud, shiny, grDevices, grid, stats, methods, umap
Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0), shinydashboard, DT, plotly, heatmaply, magrittr, utils, clusterProfiler, DOSE, slam, org.Ag.eg.db, org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db, org.Hs.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Pt.eg.db, org.Rn.eg.db, org.Sc.sgd.db, org.Ss.eg.db, org.Xl.eg.db