sechm
sechm: Complex Heatmaps from a SummarizedExperiment
Bioconductor version: 3.24 · Package version: 1.21.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
sechm provides a simple interface between SummarizedExperiment objects and the ComplexHeatmap package. It enables plotting annotated heatmaps from SE objects, with easy access to rowData and colData columns, and implements a number of features to make the generation of heatmaps easier and more flexible. These functionalities used to be part of the SEtools package.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sechm")Details
| Maintainer | Pierre-Luc Germain <pierre-luc.germain@hest.ethz.ch> |
| Author | Pierre-Luc Germain [cre, aut] (ORCID: <https://orcid.org/0000-0003-3418-4218>) |
| License | GPL-3 |
| Bug Reports | https://github.com/plger/sechm |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneExpression, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/sechm/ |
Citation
From within R, enter citation("sechm"):
Pierre-Luc Germain. sechm: sechm: Complex Heatmaps from a SummarizedExperiment. doi:10.18129/B9.bioc.sechm, R package version 1.21.0, https://bioconductor.org/packages/sechm.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | sechm_1.21.0.tar.gz |
| Windows binary (x86_64) | sechm_1.21.0.zip |
| macOS binary (arm64) | sechm_1.21.0.tgz |
| macOS binary (x86_64) | sechm_1.21.0.tgz |
Dependencies
Depends: R (>= 4.0), SummarizedExperiment, ComplexHeatmap
Imports: S4Vectors, seriation, circlize, methods, randomcoloR, stats, grid, grDevices, matrixStats