shinyMethyl

DOI: 10.18129/B9.bioc.shinyMethyl    

This is the development version of shinyMethyl; for the stable release version, see shinyMethyl.

Interactive visualization for Illumina methylation arrays

Bioconductor version: Development (3.17)

Interactive tool for visualizing Illumina methylation array data. Both the 450k and EPIC array are supported.

Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>

Citation (from within R, enter citation("shinyMethyl")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("shinyMethyl")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("shinyMethyl")

 

HTML R Script shinyMethyl: interactive visualization of Illumina 450K methylation arrays
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, MethylationArray, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version 1.35.7
In Bioconductor since BioC 3.0 (R-3.1) (8 years)
License Artistic-2.0
Depends
Imports Biobase, BiocGenerics, graphics, grDevices, htmltools, MatrixGenerics, methods, minfi, RColorBrewer, shiny, stats, utils
LinkingTo
Suggests shinyMethylData, minfiData, BiocStyle, knitr, testthat
SystemRequirements
Enhances
URL https://github.com/Jfortin1/shinyMethyl
BugReports https://github.com/Jfortin1/shinyMethyl
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package shinyMethyl_1.35.7.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/shinyMethyl
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/shinyMethyl
Package Short Url https://bioconductor.org/packages/shinyMethyl/
Package Downloads Report Download Stats

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