spkTools
This is the development version of spkTools; for the stable release version, see spkTools.
All Bioconductor versions of spkTools
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5
Methods for Spike-in Arrays
Bioconductor version: 3.24 · Package version: 1.69.0
The package contains functions that can be used to compare expression measures on different array platforms.
Author: Matthew N McCall <mccallm at gmail.com>, Rafael A Irizarry <rafa at jhu.edu>
Maintainer: Matthew N McCall <mccallm at gmail.com>
Citation
From within R, enter citation("spkTools"):
Matthew N McCall, Rafael A Irizarry. spkTools: Methods for Spike-in Arrays. doi:10.18129/B9.bioc.spkTools, R package version 1.69.0, https://bioconductor.org/packages/spkTools.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("spkTools")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.69.0 |
| License | GPL (>= 2) |
| URL | http://bioconductor.org |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 2.5 or earlier (R-2.10) (16 years) |
| Downloads rank | 1066 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Microarray, Software, Technology |
| Package Short Url | https://bioconductor.org/packages/spkTools/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("spkTools")| spkTools: Spike-in Data Analysis and Visualization | R Script | |
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Source package | spkTools_1.69.0.tar.gz |
| Windows binary (x86_64) | spkTools_1.69.0.zip |
| macOS binary (arm64) | spkTools_1.69.0.tgz |
| macOS binary (x86_64) | spkTools_1.69.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/spkTools |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/spkTools |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 2.7.0), Biobase (>= 2.5.5)
Imports: Biobase (>= 2.5.5), graphics, grDevices, gtools, methods, RColorBrewer, stats, utils
Suggests: xtable