DOI: 10.18129/B9.bioc.srnadiff    

This is the development version of srnadiff; to use it, please install the devel version of Bioconductor.

Differential Expression of Small RNA-Seq

Bioconductor version: Development (3.10)

Differential expression of small RNA-seq when reference annotation is not given.

Author: Zytnicki Matthias [aut, cre]

Maintainer: Matthias Zytnicki <matthias.zytnicki at>

Citation (from within R, enter citation("srnadiff")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Vignette Title
PDF   Reference Manual
Text   NEWS


biocViews Coverage, DifferentialExpression, Epigenetics, GeneExpression, ImmunoOncology, Preprocessing, SmallRNA, Software, StatisticalMethod
Version 1.5.0
In Bioconductor since BioC 3.7 (R-3.5) (1 year)
License GPL-3
Depends R (>= 3.5)
Imports Rcpp (>= 0.12.8), methods, utils, devtools, BiocStyle, S4Vectors, GenomeInfoDb, rtracklayer, SummarizedExperiment, IRanges, GenomicRanges, DESeq2, Rsamtools, GenomicFeatures, GenomicAlignments, ggplot2, BiocParallel
LinkingTo Rcpp
Suggests knitr, rmarkdown, testthat
SystemRequirements C++11
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package srnadiff_1.5.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.11 (El Capitan) srnadiff_1.5.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: