ssviz

This is the development version of ssviz; for the stable release version, see ssviz.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0

A small RNA-seq visualizer and analysis toolkit

Bioconductor version: Development (3.24)

Small RNA sequencing viewer

Author: Diana Low

Maintainer: Diana Low <lowdiana at gmail.com>

Citation (from within R, enter citation("ssviz")):

Diana Low. ssviz: A small RNA-seq visualizer and analysis toolkit. doi:10.18129/B9.bioc.ssviz, R package version 1.47.0, https://bioconductor.org/packages/ssviz.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("ssviz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ssviz")

ssviz	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Genetics, ImmunoOncology, MultipleComparison, RNASeq, Sequencing, Software, Visualization
Version	1.47.0
In Bioconductor since	BioC 3.0 (R-3.1) (12 years)
License	GPL-2
Depends	R (>= 3.5.0), methods, Rsamtools, Biostrings, reshape, ggplot2, RColorBrewer, stats
Imports
System Requirements
URL

Suggests	knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ssviz_1.47.0.tar.gz
Windows Binary (x86_64)	ssviz_1.47.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	ssviz_1.47.0.tgz
macOS Binary (sonoma-arm64)	ssviz_1.47.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ssviz
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ssviz
Package Short Url	https://bioconductor.org/packages/ssviz/
Package Downloads Report	Download Stats