switchde
Switch-like differential expression across single-cell trajectories
Bioconductor version: 3.24 · Package version: 1.39.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Inference and detection of switch-like differential expression across single-cell RNA-seq trajectories.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("switchde")Details
| Maintainer | Kieran Campbell <kieranrcampbell@gmail.com> |
| Author | Kieran Campbell [aut, cre] |
| License | GPL (>= 2) |
| URL | https://github.com/kieranrcampbell/switchde |
| Bug Reports | https://github.com/kieranrcampbell/switchde |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Regression, SingleCell, Software, Transcriptomics |
| Package Short Url | https://bioconductor.org/packages/switchde/ |
Citation
From within R, enter citation("switchde"):
Kieran Campbell. switchde: Switch-like differential expression across single-cell trajectories. doi:10.18129/B9.bioc.switchde, R package version 1.39.0, https://bioconductor.org/packages/switchde.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | switchde_1.39.0.tar.gz |
| Windows binary (x86_64) | switchde_1.39.0.zip |
| macOS binary (arm64) | switchde_1.39.0.tgz |
| macOS binary (x86_64) | switchde_1.39.0.tgz |
Dependencies
Depends: R (>= 3.4), SingleCellExperiment
Imports: SummarizedExperiment, dplyr, ggplot2, methods, stats
Suggests: knitr, rmarkdown, BiocStyle, testthat, numDeriv, tidyr