tRNA
Analyzing tRNA sequences and structures
Bioconductor version: 3.24 · Package version: 1.31.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The tRNA package allows tRNA sequences and structures to be accessed and used for subsetting. In addition, it provides visualization tools to compare feature parameters of multiple tRNA sets and correlate them to additional data. The tRNA package uses GRanges objects as inputs requiring only few additional column data sets.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tRNA")Details
| Maintainer | Felix GM Ernst <felix.gm.ernst@outlook.com> |
| Author | Felix GM Ernst [aut, cre] (ORCID: <https://orcid.org/0000-0001-5064-0928>) |
| License | GPL-3 + file LICENSE |
| Bug Reports | https://github.com/FelixErnst/tRNA/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/tRNA/ |
Citation
From within R, enter citation("tRNA"):
Felix GM Ernst. tRNA: Analyzing tRNA sequences and structures. doi:10.18129/B9.bioc.tRNA, R package version 1.31.0, https://bioconductor.org/packages/tRNA.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | tRNA_1.31.0.tar.gz |
| Windows binary (x86_64) | tRNA_1.31.0.zip |
| macOS binary (arm64) | tRNA_1.31.0.tgz |
| macOS binary (x86_64) | tRNA_1.31.0.tgz |
Dependencies
Depends: R (>= 3.5), GenomicRanges, Structstrings
Imports: stringr, S4Vectors, methods, BiocGenerics, IRanges, XVector, Biostrings, Modstrings, ggplot2, scales
Suggests: knitr, rmarkdown, testthat, BiocStyle, tRNAscanImport
Reverse dependencies
Depends On Me (2): tRNAdbImport, tRNAscanImport