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tidyomics

This is the development version of tidyomics; to use it, please install the devel version of Bioconductor.

Easily install and load the tidyomics ecosystem


Bioconductor version: Development (3.19)

The tidyomics ecosystem is a set of packages for ’omic data analysis that work together in harmony; they share common data representations and API design, consistent with the tidyverse ecosystem. The tidyomics package is designed to make it easy to install and load core packages from the tidyomics ecosystem with a single command.

Author: Stefano Mangiola [aut, cre] , Michael Love [aut] , William Hutchison [aut]

Maintainer: Stefano Mangiola <mangiolastefano at gmail.com>

Citation (from within R, enter citation("tidyomics")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("tidyomics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tidyomics")
Loading the tidyomics ecosystem HTML R Script
Reference Manual PDF

Details

biocViews AssayDomain, Clustering, DifferentialExpression, GeneExpression, Infrastructure, Normalization, QualityControl, RNASeq, Sequencing, Software, Transcription, Transcriptomics
Version 0.99.7
In Bioconductor since BioC 3.19 (R-4.4)
License MIT + file LICENSE
Depends R (>= 4.2)
Imports tidySummarizedExperiment, tidySingleCellExperiment, tidyseurat, tidybulk, plyranges, nullranges, purrr, rlang, stringr, cli, utils
System Requirements
URL https://github.com/tidyomics/tidyomics
Bug Reports https://github.com/tidyomics/tidyomics/issues
See More
Suggests tidyr, dplyr, tibble, ggplot2, mockr (>= 0.2.0), knitr (>= 1.41), rmarkdown (>= 2.20), testthat (>= 3.1.6)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tidyomics_0.99.7.tar.gz
Windows Binary
macOS Binary (x86_64) tidyomics_0.99.7.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/tidyomics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tidyomics
Bioc Package Browser https://code.bioconductor.org/browse/tidyomics/
Package Short Url https://bioconductor.org/packages/tidyomics/
Package Downloads Report Download Stats