yamss
This is the development version of yamss; for the stable release version, see yamss.
All Bioconductor versions of yamss
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4
Tools for high-throughput metabolomics
Bioconductor version: 3.24 · Package version: 1.39.0
Tools to analyze and visualize high-throughput metabolomics data aquired using chromatography-mass spectrometry. These tools preprocess data in a way that enables reliable and powerful differential analysis. At the core of these methods is a peak detection phase that pools information across all samples simultaneously. This is in contrast to other methods that detect peaks in a sample-by-sample basis.
Author: Leslie Myint [cre, aut] 
, Kasper Daniel Hansen [aut]
Maintainer: Leslie Myint <leslie.myint at gmail.com>
Citation
From within R, enter citation("yamss"):
Leslie Myint, Kasper Daniel Hansen. yamss: Tools for high-throughput metabolomics. doi:10.18129/B9.bioc.yamss, R package version 1.39.0, https://bioconductor.org/packages/yamss.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("yamss")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.39.0 |
| License | Artistic-2.0 |
| URL | https://github.com/hansenlab/yamss |
| Bug Reports | https://github.com/hansenlab/yamss/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.4 (R-3.3) (9 years) |
| Downloads rank | 804 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | MassSpectrometry, Metabolomics, PeakDetection, Software |
| Package Short Url | https://bioconductor.org/packages/yamss/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("yamss")| The yamss User's Guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | yamss_1.39.0.tar.gz |
| Windows binary (x86_64) | yamss_1.39.0.zip |
| macOS binary (arm64) | yamss_1.39.0.tgz |
| macOS binary (x86_64) | yamss_1.39.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/yamss |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/yamss |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.3.0), methods, BiocGenerics (>= 0.15.3), SummarizedExperiment
Imports: IRanges, stats, S4Vectors, EBImage, Matrix, mzR, data.table, grDevices, limma
Suggests: BiocStyle, knitr, rmarkdown, digest, mtbls2, testthat