Registration Open for Bioc2024
Early registration discount pricing ends May 31!

JASPAR2022

This is the development version of JASPAR2022; for the stable release version, see JASPAR2022.

Data package for JASPAR database (version 2022)


Bioconductor version: Development (3.20)

JASPAR is an open-access database containing manually curated, non-redundant transcription factor (TF) binding profiles for TFs across six taxonomic groups. In this 9th release, we expanded the CORE collection with 341 new profiles (148 for plants, 101 for vertebrates, 85 for urochordates, and 7 for insects), which corresponds to a 19% expansion over the previous release. To search thisdatabases, please use the package TFBSTools (>= 1.31.2).

Author: Damir Baranasic [aut, cre]

Maintainer: Damir Baranasic <damir.baranasic at lms.mrc.ac.uk>

Citation (from within R, enter citation("JASPAR2022")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("JASPAR2022")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("JASPAR2022")
JASPAR2022 HTML R Script
Reference Manual PDF

Details

biocViews AnnotationData, AnnotationHub, FunctionalAnnotation
Version 0.99.8
License GPL-2
Depends R (>= 4.1.0), methods, BiocFileCache, utils
Imports
System Requirements
URL http://jaspar.genereg.net/
See More
Suggests knitr, rmarkdown, BiocStyle, TFBSTools(>= 1.31.2)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me GRaNIE
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package JASPAR2022_0.99.8.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/JASPAR2022/
Package Downloads Report Download Stats