DOI: 10.18129/B9.bioc.BloodCancerMultiOmics2017    

This is the development version of BloodCancerMultiOmics2017; to use it, please install the devel version of Bioconductor.

"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al. - experimental data and complete analysis

Bioconductor version: Development (3.7)

The package contains data of the Primary Blood Cancer Encyclopedia (PACE) project together with a complete executable transcript of the statistical analysis and reproduces figures presented in the paper "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al., J. Clin. Invest. (2018) 128(1):427-445. doi:10.1172/JCI93801.

Author: Malgorzata Oles, Sascha Dietrich, Junyan Lu, Britta Velten, Andreas Mock, Vladislav Kim, Wolfgang Huber

Maintainer: Malgorzata Oles <malgorzata.oles at>

Citation (from within R, enter citation("BloodCancerMultiOmics2017")):


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HTML R Script BloodCancerMultiOmics2017
HTML R Script BloodCancerMultiOmics2017 - data overview
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biocViews CancerData, ExperimentData, LeukemiaCancerData, ReproducibleResearch
Version 0.99.5
License LGPL (>= 3)
Depends R (>= 3.5.0)
Imports beeswarm, Biobase, DESeq2, devtools, dplyr, ggdendro, ggplot2, glmnet, graphics, grDevices, grid, gtable, ipflasso, methods, RColorBrewer, reshape2, scales, stats, SummarizedExperiment, survival, tibble
Suggests BiocStyle, knitr, rmarkdown, abind, AnnotationDbi, biomaRt, broom, colorspace, cowplot, dendsort, doParallel, foreach, forestplot, genefilter, ggbeeswarm, ggtern, gridExtra, hexbin, IHW, limma, magrittr, Matrix, maxstat, nat,, pheatmap, piano, readxl, Rtsne, tidyr, tidyverse, xtable
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