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ChIPexoQualExample

This is the development version of ChIPexoQualExample; for the stable release version, see ChIPexoQualExample.

Example data for the ChIPexoQual package, which implements a quality control pipeline for ChIP-exo data


Bioconductor version: Development (3.20)

Data for the ChIPexoQual package, consisting of (3) chromosome 1 aligned reads from a ChIP-exo experiment for FoxA1 in mouse liver cell lines aligned to the mm9 genome.

Author: Rene Welch, Dongjun Chung, Sunduz Keles

Maintainer: Rene Welch <welch at stat.wisc.edu>

Citation (from within R, enter citation("ChIPexoQualExample")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ChIPexoQualExample")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPexoQualExample")
ChIPexoQualExample HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, Genome
Version 1.29.0
License GPL (>= 2)
Depends R (>= 3.3)
Imports
System Requirements
URL http://www.github.com/keleslab/ChIPexoQualExample
See More
Suggests BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me ChIPexoQual
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ChIPexoQualExample_1.29.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/ChIPexoQualExample
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ChIPexoQualExample
Package Short Url https://bioconductor.org/packages/ChIPexoQualExample/
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