FlowSorted.CordBloodCombined.450k

DOI: 10.18129/B9.bioc.FlowSorted.CordBloodCombined.450k    

This is the development version of FlowSorted.CordBloodCombined.450k; to use it, please install the devel version of Bioconductor.

Illumina 450k/EPIC data on FACS and MACS umbilical blood cells

Bioconductor version: Development (3.9)

Raw data objects to be used for umbilical cord blood cell proportion estimation in minfi and similar packages. The FlowSorted.CordBloodCombined.450k object is based in samples assayed by Bakulski et al, Gervin et al., de Goede et al., and Lin et al.

Author: Lucas A. Salas [cre, aut], Kristina Gervin [aut], Meaghan C. Jones [aut], Kelly M. Bakulski [ctb], Devin C. Koestler [ctb], John K. Wiencke [ctb], Karl T. Kelsey [ctb], Robert Lyle [ctb], Brock C. Christensen [ctb], Janine Felix [ctb]

Maintainer: Lucas A. Salas <lucas.a.salas.diaz at dartmouth.edu>

Citation (from within R, enter citation("FlowSorted.CordBloodCombined.450k")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("FlowSorted.CordBloodCombined.450k", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FlowSorted.CordBloodCombined.450k")

 

HTML R Script FlowSorted.CordBloodCombined.450k
PDF   Reference Manual
Text   NEWS

Details

biocViews ExperimentData, ExperimentHub, Genome, Homo_sapiens_Data, MethylationArrayData, MicroarrayData, Tissue, TissueMicroarrayData
Version 0.99.10
License GPL-3
Depends R (>= 3.6), minfi(>= 1.21.2), SummarizedExperiment, IlluminaHumanMethylation450kanno.ilmn12.hg19(>= 0.2.1), IlluminaHumanMethylationEPICanno.ilm10b4.hg19, ExperimentHub(>= 1.9.1), FlowSorted.Blood.EPIC, utils
Imports
LinkingTo
Suggests knitr, rmarkdown, testthat, IlluminaHumanMethylation450kmanifest(>= 0.2.0), IlluminaHumanMethylationEPICanno.ilm10b2.hg19
SystemRequirements
Enhances
URL https://github.com/immunomethylomics/FlowSorted.CordBloodCombined.450k
BugReports https://github.com/immunomethylomics/FlowSorted.CordBloodCombined.450k/issues.
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package FlowSorted.CordBloodCombined.450k_0.99.10.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/FlowSorted.CordBloodCombined.450k
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/FlowSorted.CordBloodCombined.450k
Package Short Url http://bioconductor.org/packages/FlowSorted.CordBloodCombined.450k/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: