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Hiiragi2013

This is the development version of Hiiragi2013; for the stable release version, see Hiiragi2013.

Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages


Bioconductor version: Development (3.19)

This package contains the experimental data and a complete executable transcript (vignette) of the statistical analysis presented in the paper "Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages" by Y. Ohnishi, W. Huber, A. Tsumura, M. Kang, P. Xenopoulos, K. Kurimoto, A. K. Oles, M. J. Arauzo-Bravo, M. Saitou, A.-K. Hadjantonakis and T. Hiiragi; Nature Cell Biology (2014) 16(1): 27-37. doi: 10.1038/ncb2881."

Author: Andrzej Oles, Wolfgang Huber

Maintainer: Andrzej Oles <andrzej.oles at embl.de>

Citation (from within R, enter citation("Hiiragi2013")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Hiiragi2013")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Hiiragi2013")
Hiiragi2013 PDF R Script
Reference Manual PDF

Details

biocViews ExperimentData, MicroarrayData, ReproducibleResearch, qPCRData
Version 1.39.0
License Artistic-2.0
Depends R (>= 3.0.0), affy, Biobase, boot, clue, cluster, genefilter, geneplotter, gplots, gtools, KEGGREST, MASS, mouse4302.db, RColorBrewer, xtable
Imports grid, lattice, latticeExtra
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Suggests ArrayExpress, BiocStyle
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Hiiragi2013_1.39.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/Hiiragi2013
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Hiiragi2013
Package Short Url https://bioconductor.org/packages/Hiiragi2013/
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