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MouseThymusAgeing

This is the development version of MouseThymusAgeing; for the stable release version, see MouseThymusAgeing.

Single-cell Transcriptomics Data of the Ageing Mouse Thymus


Bioconductor version: Development (3.20)

This package provides data access to counts matrices and meta-data for single-cell RNA sequencing data of thymic epithlial cells across mouse ageing using SMARTseq2 and 10X Genommics chemistries. Access is provided as a data package via ExperimentHub. It is designed to facilitate the re-use of data from Baran-Gale _et al._ in a consistent format that includes relevant and informative meta-data.

Author: Mike Morgan [aut, cre], Jeanette Baran-Gale [aut]

Maintainer: Mike Morgan <michael.morgan at abdn.ac.uk>

Citation (from within R, enter citation("MouseThymusAgeing")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MouseThymusAgeing")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseThymusAgeing")
Available datasets HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, SingleCellData
Version 1.13.0
License GPL-3
Depends SingleCellExperiment, SummarizedExperiment
Imports ExperimentHub, methods, BiocGenerics, S4Vectors
System Requirements
URL
Bug Reports https://github.com/MarioniLab/MouseThymusAgeing/issues
See More
Suggests knitr, scuttle, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me miloR
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MouseThymusAgeing_1.13.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/MouseThymusAgeing
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MouseThymusAgeing
Package Short Url https://bioconductor.org/packages/MouseThymusAgeing/
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