DOI: 10.18129/B9.bioc.RTCGA.rnaseq    

This is the development version of RTCGA.rnaseq; for the stable release version, see RTCGA.rnaseq.

Rna-seq datasets from The Cancer Genome Atlas Project

Bioconductor version: Development (3.9)

Package provides rna-seq datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Rna-seq data format is explained here https://wiki.nci.nih.gov/display/TCGA/RNASeq+Version+2. Data source is illumina hiseq Level 3 RSEM normalized expression data. Data from 2015-11-01 snapshot.

Author: Marcin Kosinski <m.p.kosinski at gmail.com>

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R, enter citation("RTCGA.rnaseq")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("RTCGA.rnaseq", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Using RTCGA to download RNAseq data as included in RTCGA.rnaseq
PDF   Reference Manual
Text   NEWS


biocViews Annotation Data, ExperimentData
Version 20151101.13.0
License GPL-2
Depends R (>= 3.2.0), RTCGA
Suggests knitr
BugReports https://github.com/RTCGA/RTCGA/issues
Depends On Me
Imports Me
Suggests Me RTCGA
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package RTCGA.rnaseq_20151101.13.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/RTCGA.rnaseq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RTCGA.rnaseq
Package Short Url http://bioconductor.org/packages/RTCGA.rnaseq/
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