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TabulaMurisSenisData

This is the development version of TabulaMurisSenisData; for the stable release version, see TabulaMurisSenisData.

Bulk and single-cell RNA-seq data from the Tabula Muris Senis project


Bioconductor version: Development (3.20)

This package provides access to RNA-seq data generated by the Tabula Muris Senis project via the Bioconductor project. The data is made available without restrictions by the Chan Zuckerberg Biohub. It is provided here without further processing, collected in the form of SingleCellExperiment objects.

Author: Charlotte Soneson [aut, cre] , Dania Machlab [aut] , Federico Marini [aut] , Stefania Astrologo [aut]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("TabulaMurisSenisData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TabulaMurisSenisData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TabulaMurisSenisData")
TabulaMurisSenisData HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, RNASeqData, SingleCellData
Version 1.11.0
License MIT + file LICENSE
Depends
Imports ExperimentHub, SingleCellExperiment, HDF5Array, SummarizedExperiment, gdata, AnnotationHub
System Requirements
URL https://github.com/fmicompbio/TabulaMurisSenisData
Bug Reports https://github.com/fmicompbio/TabulaMurisSenisData/issues
See More
Suggests ggplot2, testthat, knitr, rmarkdown, iSEE, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me SPOTlight
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TabulaMurisSenisData_1.11.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/TabulaMurisSenisData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TabulaMurisSenisData
Package Short Url https://bioconductor.org/packages/TabulaMurisSenisData/
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