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methylclockData

This is the development version of methylclockData; for the stable release version, see methylclockData.

Data for methylclock package


Bioconductor version: Development (3.20)

Collection of 9 datasets, andrews and bakulski cord blood, blood gse35069, blood gse35069 chen, blood gse35069 complete, combined cord blood, cord bloo d gse68456, gervin and lyle cord blood, guintivano dlpfc and saliva gse48472". Data downloaded from [meffil](https://github.com/perishky/meffil/). Data used to estimate cell counts using Extrinsic epigenetic age acceleration (EEAA) method Collection of 12 datasets to use with MethylClock package to estimate chronological and gestational DNA methylationwith estimators to use wit different methylation clocks

Author: Juan R. Gonzalez [aut], Dolors Pelegri-Siso [aut, cre]

Maintainer: Dolors Pelegri-Siso <dolors.pelegri at isglobal.org>

Citation (from within R, enter citation("methylclockData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("methylclockData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methylclockData")
References for metilclock using Bioconductor's ExperimentHub HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, Homo_sapiens_Data, OrganismData, SpecimenSource, Tissue
Version 1.13.0
License MIT + file LICENSE
Depends
Imports ExperimentHubData, ExperimentHub, utils
System Requirements
URL https://github.com/isglobal-brge/methylclockData
Bug Reports https://github.com/isglobal-brge/methylclockData/issues
See More
Suggests knitr, BiocStyle, rmarkdown
Linking To
Enhances
Depends On Me methylclock
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package methylclockData_1.13.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/methylclockData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/methylclockData
Package Short Url https://bioconductor.org/packages/methylclockData/
Package Downloads Report Download Stats