minfiDataEPIC

This is the development version of minfiDataEPIC; for the stable release version, see minfiDataEPIC.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4

Example data for the Illumina Methylation EPIC array

Bioconductor version: Development (3.24)

Data from 3 technical replicates of the cell line GM12878 from the EPIC methylation array.

Author: Jean-Philippe Fortin, Kasper Daniel Hansen

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("minfiDataEPIC")):

Jean-Philippe Fortin, Kasper Daniel Hansen. minfiDataEPIC: Example data for the Illumina Methylation EPIC array. doi:10.18129/B9.bioc.minfiDataEPIC, R package version 1.39.0, https://bioconductor.org/packages/minfiDataEPIC.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("minfiDataEPIC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version	1.39.0
In Bioconductor since	BioC 3.4 (R-3.3) (10 years)
License	Artistic-2.0
Depends	R (>= 3.5.0), minfi (>= 1.21.2), IlluminaHumanMethylationEPICmanifest, IlluminaHumanMethylationEPICanno.ilm10b2.hg19
Imports
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	MethylAid, MethylAidData, minfi, recountmethylation, REMP
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	minfiDataEPIC_1.39.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/minfiDataEPIC
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/minfiDataEPIC
Package Short Url	https://bioconductor.org/packages/minfiDataEPIC/
Package Downloads Report	Download Stats