DOI: 10.18129/B9.bioc.pasillaBamSubset    

This is the development version of pasillaBamSubset; for the stable release version, see pasillaBamSubset.

Subset of BAM files from "Pasilla" experiment

Bioconductor version: Development (3.9)

Subset of BAM files untreated1.bam (single-end reads) and untreated3.bam (paired-end reads) from "Pasilla" experiment (Pasilla knock-down by Brooks et al., Genome Research 2011). See the vignette in the pasilla data package for how BAM files untreated1.bam and untreated3.bam were obtained from the RNA-Seq read sequence data that is provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181. Also contains the DNA sequence for fly chromosome 4 to which the reads can be mapped.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages at>

Citation (from within R, enter citation("pasillaBamSubset")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("pasillaBamSubset", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


PDF   Reference Manual


biocViews DNASeqData, ExperimentData, Genome, RNASeqData
Version 0.21.0
License LGPL
Suggests pasilla
Depends On Me
Imports Me
Suggests Me GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, karyoploteR, plyranges, TransView
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package pasillaBamSubset_0.21.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
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